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           ISMB'07
 
 
 
 
 
 
 
 
 
 

BioLINK 2007


Agenda

       

Time

Title

Authors

9:00-9:10

Introduction

Gene Identification

9:10-9:30

From Gene Names to Actual Genes

I. Korkontzelos, A. Vlachos, and I. Lewin

9:30-9:50

Resolution of Coordination Ellipses in Complex Biological Named Entity Mentions Using Conditional Random Fields

E. Buyko, K. Tomanek, and      U. Hahn

 

9:50-10:10

An Investigation into the Reusability of Biomedical

Terminologies for the Resolution of Referential

Expressions

M. Poprat and U. Hahn

10:10-10:30

Exploiting Synonym Relationships in Biomedical Named Entity Matching

V. Ha-Thuc and P. Srinivasan

 

10:30-11:00  Coffee Break

11:00-12:00

BioCreative Report and Discussion

BioCreative Organizers

 

12:00-13:00 Lunch

13:00-13:20

Filtering Bioentity Recognition Errors in Bioliterature using a Case-based Approach

F.M. Couto, T. Grego, R. Torres, P. Sanchez, L. Pascual and C. Blaschke

Corpora and Annotation

13:20-13:40

Efficient Annotation with the Jena Annotation Environment

K. Tomanek, J. Wermter, and U. Hahn

13:40-14:00

An Annotated Biological Corpus

J. Pustejovsky, J. Castaño, M. Kotecki and B. Cochran

14:00-14:20

ProSpecTome: A New Tagged Corpus for Protein Named Entity Recognition

R. Kabiljo, D. Stoucheva                 and A.J. Shepherd

14:20-14:30

10  Minutes Break

Relationship Extraction & Other Applications

14:30-14:50

Multi-dimensional Classification of Biomedical Text Fragments : Toward Utility-Based Text Mining

H. Shatkay, F. Pan, A. Rzhetsky and W.J. Wilbur

14:50-15:10

Domain-Neutral Relation Characterisation: Evaluation on Disease-Treatment Data

B. Hachey

15:10-15:30

Learning Information Extraction Patterns from Biomedical Text

M. Padrón, R. Torres, A. Valencia and C. Blaschke

 

15:30-16:00 Coffee Break

16:00-16:20

Interactive Medline Search Engine Utilizing Biomedical Concepts and Data Integration

W. Xuan, M. Dai, B. Mirel, B. Athey, S.J. Watson and F. Meng

16:20-17:20

Discussion

16:20-16:30

Short Poster Advertisements

17:30-18:30

Poster Session